Web-based tools:

  • Phosphopeptide BLAST Browser

    Input sequence only or fasta format (one protein sequence each time): examples
    Against organism:   
    Against research group or reference:   
    E-value threshold:      

Stand-alone applications:

  • Musite: an application for phosphorylation site prediction.
  • PhosSite: an application to process high-throughput phosphorylation data.
  • P3-Motif: an application to predict phosphorylation motifs
  • SpotLink: create a 2-D gel web database similar to www.oilseedproteomics.missouri.edu with this tool. Alpha software for developing web pages from a gel image and associated information about each protein spot.
  • DecoyDBCreator: an application to create decoy search database.
 
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